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1

[Advances in Experimental Medicine and Biology] Mechanisms of Genome Protection and Repair Volume 1241 ||

Zharkov, Dmitry O.

Year:

2020

File:

PDF, 6.74 MB

2020

2

The DNA trackwalkers: Principles of lesion search and recognition by DNA glycosylases

Dmitry O. Zharkov, Arthur P. Grollman

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2005

Language:

english

File:

PDF, 584 KB

english, 2005

3

[IEEE 2015 16th International Conference of Young Specialists on Micro/Nanotechnologies and Electron Devices (EDM) - Erlagol, Russia (2015.6.29-2015.7.3)] 2015 16th International Conference of Young Specialists on Micro/Nanotechnologies and Electron Devices - The universal control system for semiconductor converters with PWM

Balagurov, Maxim V., Sidorov, Andrey V., Korobkov, Dmitry V., Zharkov, Maxim A., Shtein, Dmitry A., Bessonov, Igor O.

Year:

2015

Language:

english

File:

PDF, 878 KB

english, 2015

4

Ionic strength and magnesium affect the specificity of Escherichia coli and human 8-oxoguanine-DNA glycosylases

Viktoriya S. Sidorenko, Grigory V. Mechetin, Georgy A. Nevinsky, Dmitry O. Zharkov

Journal:

Year:

2008

Language:

english

File:

PDF, 589 KB

english, 2008

5

Substrate specificity and excision kinetics of natural polymorphic variants and phosphomimetic mutants of human 8-oxoguanine-DNA glycosylase

Viktoriya S. Sidorenko, Arthur P. Grollman, Pawel Jaruga, Miral Dizdaroglu, Dmitry O. Zharkov

Journal:

Year:

2009

Language:

english

File:

PDF, 332 KB

english, 2009

6

10.1038/35020749

Zharkov, Dmitry

Journal:

Year:

2000

Language:

english

File:

PDF, 49 KB

english, 2000

7

Effect of the multifunctional proteins RPA, YB-1, and XPC repair factor on AP site cleavage by DNA glycosylase NEIL1

Pavel Pestryakov, Dmitry O. Zharkov, Inga Grin, Elizaveta E. Fomina, Ekaterina R. Kim, Loïc Hamon, Irina A. Eliseeva, Irina O. Petruseva, Patrick A. Curmi, Lev P. Ovchinnikov, Olga I. Lavrik

Journal:

Journal of Molecular Recognition

Year:

2012

Language:

english

File:

PDF, 5.90 MB

english, 2012

8

Mechanism of interaction between human 8-oxoguanine-DNA glycosylase and AP endonuclease

Victoria S. Sidorenko, Georgy A. Nevinsky, Dmitry O. Zharkov

Journal:

Year:

2007

Language:

english

File:

PDF, 774 KB

english, 2007

9

Correlated cleavage of single- and double-stranded substrates by uracil-DNA glycosylase

Viktoriya S. Sidorenko, Grigory V. Mechetin, Georgy A. Nevinsky, Dmitry O. Zharkov

Journal:

Year:

2008

Language:

english

File:

PDF, 249 KB

english, 2008

10

The role of mammalian NEIL1 protein in the repair of 8-oxo-7,8-dihydroadenine in DNA

Inga R. Grin, Grigory L. Dianov, Dmitry O. Zharkov

Journal:

Year:

2010

Language:

english

File:

PDF, 458 KB

english, 2010

11

Recognition of damaged DNA by Escherichia coli Fpg protein: insights from structural and kinetic data

Dmitry O. Zharkov, Alexander A. Ishchenko, Kenneth T. Douglas, Georgy A. Nevinsky

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2003

Language:

english

File:

PDF, 250 KB

english, 2003

12

Immunofluorescent detection of 8-oxoguanine DNA lesions in liver cells from aging OXYS rats, a strain prone to overproduction of free radicals

Eugenia A. Kemeleva, Olga I. Sinitsyna, Nataliya G. Kolosova, Elena A. Vasyunina, Dmitry O. Zharkov, Kimberly A. Conlon, Miguel Berrios, Georgy A. Nevinsky

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2006

Language:

english

File:

PDF, 365 KB

english, 2006

13

Uracil-DNA glycosylase: Structural, thermodynamic and kinetic aspects of lesion search and recognition

Dmitry O. Zharkov, Grigory V. Mechetin, Georgy A. Nevinsky

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2010

Language:

english

File:

PDF, 754 KB

english, 2010

14

Foreword from the organizers

Olga I. Lavrik, Nikolay V. Tomilin, Serge Boiteux, Dmitry O. Zharkov

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2010

Language:

english

File:

PDF, 87 KB

english, 2010

15

Combining structural and bioinformatics methods for the analysis of functionally important residues in DNA glycosylases

Dmitry O. Zharkov, Arthur P. Grollman

Journal:

Free Radical Biology and Medicine

Year:

2002

Language:

english

File:

PDF, 395 KB

english, 2002

16

Specificity of stimulation of human 8-oxoguanine–DNA glycosylase by AP endonuclease

Viktoriya S. Sidorenko, Georgy A. Nevinsky, Dmitry O. Zharkov

Journal:

Biochemical and Biophysical Research Communications

Year:

2008

Language:

english

File:

PDF, 178 KB

english, 2008

17

Inactivation of NEIL2 DNA glycosylase by pyridoxal phosphate reveals a loop important for substrate binding

Inga R. Grin, Robert A. Rieger, Dmitry O. Zharkov

Journal:

Biochemical and Biophysical Research Communications

Year:

2010

Language:

english

File:

PDF, 662 KB

english, 2010

18

Mechanism of translocation of uracil–DNA glycosylase from Escherichia coli between distributed lesions

Grigory V. Mechetin, Dmitry O. Zharkov

Journal:

Biochemical and Biophysical Research Communications

Year:

2011

Language:

english

File:

PDF, 316 KB

english, 2011

19

Immunofluorescent localization of the murine 8-oxoguanine DNA glycosylase (mOGG1) in cells growing under normal and nutrient deprivation conditions

Kimberly A. Conlon, Dmitry O. Zharkov, Miguel Berrios

Journal:

Year:

2003

Language:

english

File:

PDF, 326 KB

english, 2003

20

Cell cycle regulation of the murine 8-oxoguanine DNA glycosylase (mOGG1): mOGG1 associates with microtubules during interphase and mitosis

Kimberly A. Conlon, Dmitry O. Zharkov, Miguel Berrios

Journal:

Year:

2004

Language:

english

File:

PDF, 741 KB

english, 2004

21

The murine DNA glycosylase NEIL2 (mNEIL2) and human DNA polymerase β bind microtubules in situ and in vitro

Kimberly A. Conlon, Holly Miller, Thomas A. Rosenquist, Dmitry O. Zharkov, Miguel Berrios

Journal:

Year:

2005

Language:

english

File:

PDF, 337 KB

english, 2005

22

Structure of T4 Pyrimidine Dimer Glycosylase in a Reduced Imine Covalent Complex with Abasic Site-containing DNA

Gali Golan, Dmitry O. Zharkov, Arthur P. Grollman, M.L. Dodson, Amanda K. McCullough, R. Stephen Lloyd, Gil Shoham

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 1.30 MB

english, 2006

23

Energetics of Lesion Recognition by a DNA Repair Protein: Thermodynamic Characterization of Formamidopyrimidine-glycosylase (Fpg) Interactions with Damaged DNA Duplexes

Conceição A.S.A Minetti, David P Remeta, Dmitry O Zharkov, G Eric Plum, Francis Johnson, Arthur P Grollman, Kenneth J Breslauer

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.01 MB

english, 2003

24

Inactivation of mammalian 8-oxoguanine-DNA glycosylase by cadmium(II): implications for cadmium genotoxicity

Dmitry O Zharkov, Thomas A Rosenquist

Journal:

Year:

2002

Language:

english

File:

PDF, 300 KB

english, 2002

25

The novel DNA glycosylase, NEIL1, protects mammalian cells from radiation-mediated cell death

Thomas A Rosenquist, Elena Zaika, Andrea S Fernandes, Dmitry O Zharkov, Holly Miller, Arthur P Grollman

Journal:

Year:

2003

Language:

english

File:

PDF, 225 KB

english, 2003

26

Structural characterization of the Fpg family of DNA glycosylases

Dmitry O Zharkov, Gil Shoham, Arthur P Grollman

Journal:

Year:

2003

Language:

english

File:

PDF, 1.05 MB

english, 2003

27

Deoxyribophosphate lyase activity of mammalian endonuclease VIII-like proteins

Inga R. Grin, Svetlana N. Khodyreva, Georgy A. Nevinsky, Dmitry O. Zharkov

Journal:

Year:

2006

Language:

english

File:

PDF, 172 KB

english, 2006

28

MDTRA: A molecular dynamics trajectory analyzer with a graphical user interface

Popov, Alexander V., Vorobjev, Yury N., Zharkov, Dmitry O.

Journal:

Journal of Computational Chemistry

Year:

2013

Language:

english

File:

PDF, 2.16 MB

english, 2013

29

Conformational Transitions in Human AP Endonuclease 1 and Its Active Site Mutant during Abasic Site Repair

Kanazhevskaya, Lyubov Yu., Koval, Vladimir V., Zharkov, Dmitry O., Strauss, Phyllis R., Fedorova, Olga S.

Journal:

Year:

2010

Language:

english

File:

PDF, 2.71 MB

english, 2010

30

Excision of 8-oxoguanine from methylated CpG dinucleotides by human 8-oxoguanine DNA glycosylase

Kasymov, Rustem D., Grin, Inga R., Endutkin, Anton V., Smirnov, Serge L., Ishchenko, Alexander A., Saparbaev, Murat K., Zharkov, Dmitry O.

Journal:

Year:

2013

Language:

english

File:

PDF, 713 KB

english, 2013

31

Age-dependent guanine oxidation in DNA of different brain regions of Wistar rats and prematurely aging OXYS rats

Sattarova, Evgeniya A., Sinitsyna, Olga I., Vasyunina, Elena A., Duzhak, Alexander B., Kolosova, Nataliya G., Zharkov, Dmitry O., Nevinsky, Georgy A.

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

2013

Language:

english

File:

PDF, 787 KB

english, 2013

32

Eukaryotic ribosomal protein S3: A constituent of translational machinery and an extraribosomal player in various cellular processes

Graifer, Dmitri, Malygin, Alexey, Zharkov, Dmitry O., Karpova, Galina

Journal:

Year:

2014

Language:

english

File:

PDF, 4.37 MB

english, 2014

33

Conformational dynamics of the interaction of Escherichia coli endonuclease VIII with DNA substrates

Kuznetsov, Nikita A., Koval, Vladimir V., Zharkov, Dmitry O., Fedorova, Olga S.

Journal:

Year:

2012

Language:

english

File:

PDF, 883 KB

english, 2012

34

MutY DNA Glycosylase: Base Release and Intermediate Complex Formation †

Zharkov, Dmitry O., Grollman, Arthur P.

Journal:

Year:

1998

Language:

english

File:

PDF, 149 KB

english, 1998

35

Cloning and Characterization of a Mammalian 8-oxoguanine DNA Glycosylase

Thomas A. Rosenquist, Dmitry O. Zharkov and Arthur P. Grollman

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 1.48 MB

english, 1997

36

Correlated Cleavage of Damaged DNA by Bacterial and Human 8-Oxoguanine-DNA Glycosylases †

Sidorenko, Viktoriya S., Zharkov, Dmitry O.

Journal:

Year:

2008

Language:

english

File:

PDF, 460 KB

english, 2008

37

Reversible Chemical Step and Rate-Limiting Enzyme Regeneration in the Reaction Catalyzed by Formamidopyrimidine-DNA Glycosylase

Kuznetsov, Nikita A., Zharkov, Dmitry O., Koval, Vladimir V., Buckle, Malcolm, Fedorova, Olga S.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.65 MB

english, 2009

38

Pre-Steady-State Kinetic Study of Substrate Specificity of Escherichia coli Formamidopyrimidine−DNA Glycosylase †

Kuznetsov, Nikita A., Koval, Vladimir V., Zharkov, Dmitry O., Vorobjev, Yuri N., Nevinsky, Georgy A., Douglas, Kenneth T., Fedorova, Olga S.

Journal:

Year:

2007

Language:

english

File:

PDF, 799 KB

english, 2007

39

Substrate Discrimination by Formamidopyrimidine-DNA Glycosylase: Distinguishing Interactions within the Active Site †

Perlow-Poehnelt, Rebecca A., Zharkov, Dmitry O., Grollman, Arthur P., Broyde, Suse

Journal:

Year:

2004

Language:

english

File:

PDF, 1.27 MB

english, 2004

40

Role for Lysine 142 in the Excision of Adenine from A:G Mispairs by MutY DNA Glycosylase of Escherichia coli †

Zharkov, Dmitry O., Gilboa, Rotem, Yagil, Ishay, Kycia, Jadwiga H., Gerchman, Sue Ellen, Shoham, Gil, Grollman, Arthur P.

Journal:

Year:

2000

Language:

english

File:

PDF, 271 KB

english, 2000

41

Catalytic Mechanism of Escherichia coli Endonuclease VIII: Roles of the Intercalation Loop and the Zinc Finger †

Kropachev, Konstantin Y., Zharkov, Dmitry O., Grollman, Arthur P.

Journal:

Year:

2006

Language:

english

File:

PDF, 519 KB

english, 2006

42

[IEEE 2014 14th International Conference on Environment and Electrical Engineering (EEEIC) - Krakow (2014.5.10-2014.5.12)] 2014 14th International Conference on Environment and Electrical Engineering - Automated diagnostics of current pick-up disturbances in electric traction networks

Bartomiejczyk, Mikoaj, Hamacek, Stefan, Kolosov, Dmitry, Zharkov, Yuri I.

Year:

2014

Language:

english

File:

PDF, 237 KB

english, 2014

43

Inhibition of abasic site cleavage in bubble DNA by multifunctional protein YB-1

Fomina, Elizaveta E., Pestryakov, Pavel E., Kretov, Dmitry A., Zharkov, Dmitry O., Ovchinnikov, Lev P., Curmi, Patrick A., Lavrik, Olga I.

Journal:

Journal of Molecular Recognition

Year:

2015

Language:

english

File:

PDF, 769 KB

english, 2015

44

109 Molecular dynamics done quick: efficient trajectory analysis software

Popov, Alexander V., Vorobjev, Yuri N., Zharkov, Dmitry O.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 98 KB

english, 2013

45

114 Kinetic and thermodynamic basis for damaged bases excision by 8-oxoguanine-DNA glycosylases

Endutkin, Anton, Zharkov, Dmitry

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 88 KB

english, 2013

46

Characterization of DNA substrate specificities of apurinic/apyrimidinic endonucleases from Mycobacterium tuberculosis

Abeldenov, Sailau, Talhaoui, Ibtissam, Zharkov, Dmitry O., Ishchenko, Alexander A., Ramanculov, Erlan, Saparbaev, Murat, Khassenov, Bekbolat

Journal:

Year:

2015

Language:

english

File:

PDF, 3.72 MB

english, 2015

47

Morphology and Structure of the Interface Layers in Ni/Ge Thin Films

Greben'kova, Yuliya E., Edelman, Irina S., Chernichenko, Angelina V., Velikanov, Dmitry A., Zharkov, Sergey M., Turpanov, Igor A.

Journal:

Solid State Phenomena

Year:

2014

Language:

english

File:

PDF, 536 KB

english, 2014

48

Conformational Dynamics of DNA Repair by Escherichia coli Endonuclease III

Kuznetsov, Nikita A., Kladova, Olga A., Kuznetsova, Alexandra A., Ishchenko, Alexander A., Saparbaev, Murat K., Zharkov, Dmitry O., Fedorova, Olga S.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 3.90 MB

english, 2015

49

[IEEE 2015 16th International Conference of Young Specialists on Micro/Nanotechnologies and Electron Devices (EDM) - Erlagol, Russia (2015.6.29-2015.7.3)] 2015 16th International Conference of Young Specialists on Micro/Nanotechnologies and Electron Devices - Mathematical model of the starter system based on a three-stage synchronous generator with damping cage

Zharkov, Maksim A., Kharitonov, Sergey A., Simin, Vasiliy S., Korobkov, Dmitry V., Volkov, Alexander G., Bessonov, Igor O.

Year:

2015

Language:

english

File:

PDF, 728 KB

english, 2015

50

115 Cytosine demethylation through off-target base excision repair

Endutkin, Anton, Zharkov, Dmitry

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 479 KB

english, 2015

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